PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485891
Common NameARALYDRAFT_485891
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 320aa    MW: 35309.4 Da    PI: 6.931
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485891genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.8e-18228261134
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
             C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  485891 228 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 261
             99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-961318IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15222272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.031222258IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15224285No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14226259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-14227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003204.1E-16228261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIGQSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD SFPTIWTTHH DTWPAASDPL  60
FSSNTNSDSS PELYVPFEDI VKVERPPTFV EESLVEKKED SFSTNTDSSS SHSQFRSSSP  120
VSVLESSSSS SQTINTTSLV LPGKHGRPRT KRPRPPVQEK DRVKDNVCGG DSRLIIRIPK  180
QFLSDHNKMI NKKKKKKAKI TSSSSSSGID LEVNGKNVDS YTSEQRKCMH CEVTKTPQWR  240
LGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFTPALHS NSHKKVAEMR SKRCSDGSYI  300
TEENDLQGLI PNNAYIGVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap485891
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4121070.0AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBankAK3175030.0AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBankAY0780290.0AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881225.10.0GATA transcription factor 8
RefseqXP_020881226.10.0GATA transcription factor 8
SwissprotQ9SV300.0GATA8_ARATH; GATA transcription factor 8
TrEMBLD7LUX80.0D7LUX8_ARALL; GATA transcription factor
STRINGfgenesh2_kg.5__1883__AT3G54810.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-150GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]