PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 484129 | ||||||||
Common Name | ARALYDRAFT_484129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 263aa MW: 29346.6 Da PI: 7.7411 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.8 | 5.2e-33 | 35 | 88 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 484129 35 PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-30 | 31 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.405 | 31 | 91 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.6E-23 | 35 | 88 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.38E-15 | 35 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.6E-9 | 36 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGKCGGRNGN GRFNGGGFHG HGGGRVRPYV RSPVPRLRWT PDLHRCFVHA VEILGGQHRA 60 TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRRQDS EEDNNLHDNL 120 SLHTRNDCLL GFHSFPLSSH SSFRGGGRRK EHQQTSESGY DDDDDFLHIM NMKKTKDTTT 180 FLSHHFPKGT EEWREQEHEE EEEDLSLCLS LNHHHWRSNG SSVSETSEAA VSTCSAPFVS 240 KDCFGSSKID LNLNLSISLL GS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 484129 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229511 | 0.0 | AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12. | |||
GenBank | BT008556 | 0.0 | BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds. | |||
GenBank | BT008699 | 0.0 | BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds. | |||
GenBank | KJ138924 | 0.0 | KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882402.1 | 0.0 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 2e-71 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | D7LPZ1 | 0.0 | D7LPZ1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__121__AT2G02060.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 7e-66 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 484129 |
Entrez Gene | 9311178 |