PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483808
Common NameARALYDRAFT_483808
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 564aa    MW: 62961.6 Da    PI: 5.3275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483808genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14395441455
             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YIk+Lq
  483808 395 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 441
             799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.5E-5248239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.936391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-19394452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-15394445No hitNo description
PfamPF000101.8E-11395441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18395452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-18397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MNISDVGWDD EEKSVVIAVL GHLASDFLRA NSNSNQNLFL VMGTDDSLNK KLSSLVDWPN  60
SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEEEES KVVRSYNFSN MGVEEETWQD  120
MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYASGKHV  180
WLSDAVNSES DYCFRSFMAK SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM  240
RRVTQPLMVT SNTNMSGGIH KLFGQDLSGA HAYPKKLEVR RNLDERFTPQ SWEGYIHNKG  300
PTFGYTPQIE DVKVQENVNM VVDDNNYKTQ IEFAGSSVAA SSNPSTNTQL EKSESCTEKR  360
PVSLLAGAGT VSVVDEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRSVVPN  420
ISKMDKASLL GDAISYIKEL QEKVKIMEDE RADNSLSESN TRTVESPEVD IQAMNEEVVV  480
RVVSPLDSHP ASRIIQAMRN SNVSLMEAKL SLAEDTMFHT FVVKSNNGTD PLTKEKLIAA  540
VYPENSSTQQ PLPSSSSQVS GDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-28389451264Transcription factor MYC2
5gnj_B9e-28389451264Transcription factor MYC2
5gnj_E9e-28389451264Transcription factor MYC2
5gnj_F9e-28389451264Transcription factor MYC2
5gnj_G9e-28389451264Transcription factor MYC2
5gnj_I9e-28389451264Transcription factor MYC2
5gnj_M9e-28389451264Transcription factor MYC2
5gnj_N9e-28389451264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376384KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap483808
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064180.0AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence.
GenBankAC0065260.0AC006526.8 Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884075.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLD7LEK30.0D7LEK3_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__2868__AT2G46510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]