PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

483321

Common Name

ARALYDRAFT_483321

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 327aa MW: 35992.2 Da PI: 6.292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
483321	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.3e-09	194	241	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq 483321 194 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 241 79**********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.59E-9	188	245	No hit	No description
SuperFamily	SSF47459	1.7E-15	188	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-15	190	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	194	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	196	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDLTQGFGAR SGVVGPVTGL ESLNFSDEFR HLVTTMPPEN TGGSFTALLE MPVTQAMELL 60 HFTDSSSSQA RTVTGDIAPT TLHPFGALTF PSNSLLLDRA ARFSVIATEQ NGNISGETAN 120 SLPSNSGANL DRVKAEPAET DSMVENQNQN YSSGKRKDRE KKVKSSTKKT KSSVESDKLP 180 YVHVRARRGQ ATDNHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL 240 QRQVEMLSMR LAAVNPRVEF NLDSILASEN GSLMDGNFNG ESYHQLQQWP FDGYHQPEWG 300 REEDHHQANF SMGSATLHPN QVKMEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	483321

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176634	0.0	AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBank	AY065411	0.0	AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBank	AY096521	0.0	AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885016.1	0.0	transcription factor bHLH48
Swissprot	Q8VZ02	0.0	BH048_ARATH; Transcription factor bHLH48
TrEMBL	D7LI39	0.0	D7LI39_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.4__2381__AT2G42300.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	483321
Entrez Gene	9317898

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]