PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 482718 | ||||||||
Common Name | ARALYDRAFT_482718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 434aa MW: 47658.8 Da PI: 9.6545 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8.2e-32 | 165 | 221 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers +++v ei+Y+geHnh+k 482718 165 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSV-EGQVSEIVYQGEHNHSK 221 9***************************************.***************85 PP | |||||||
2 | WRKY | 103 | 1.7e-32 | 347 | 404 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+ 482718 347 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 404 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-28 | 160 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 163 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 164 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.768 | 165 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 165 | 219 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.5E-32 | 336 | 404 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.651 | 341 | 406 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-27 | 342 | 404 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-38 | 346 | 405 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-26 | 347 | 404 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MEVKDGERVV IAKPVASRPS SSPSFRTFTE LLTDSVTVSP QSNCHAIVDA AIRPKTLRFN 60 QPVAASVSCP RAEGNGIGNE KSCDDSNSRN YVVYKPKAKL VSKATVSALA NMLQGNRQQT 120 WRQTEALSYG KSVSQGTHRA DPNLVQKVPS FTESETSIGD RSSVDGYNWR KYGQKQVKGS 180 ECPRSYYKCT HPKCPVKKKV ERSVEGQVSE IVYQGEHNHS KPSCPLPRRA SSSISSGFQK 240 PPKGIASEGS MGQDSNNNLY CPVWNNQGND STKNRTEKMN EGCVITPFEF AVPRSTNSNP 300 GTSDSGKSSQ CDEGELDDQS RSKRRKNEKQ SSEAGVSQGS VESDSLEDGF RWRKYGQKVV 360 GGNAYPRSYY RCTSANCRAR KHVERASDDP RAFITTYEGK HNHHLLLSPP TSSTLPFNSP 420 QLSNSPQLSK QTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 152 | 405 | 3 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 152 | 405 | 3 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 482718 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB289607 | 0.0 | AB289607.1 Arabidopsis thaliana TTG2 mRNA for WRKY transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885179.1 | 0.0 | WRKY transcription factor 44 | ||||
Swissprot | Q9ZUU0 | 0.0 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | D7LJR0 | 0.0 | D7LJR0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1778__AT2G37260.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8362 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | 482718 |
Entrez Gene | 9315726 |