PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482495
Common NameARALYDRAFT_482495
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 291aa    MW: 33625.7 Da    PI: 10.6522
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482495genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.1e-2019113199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             ffkvl + d +++++  lp +f+++++++ e s +++++ ++g sWev++  +k+++  ++ ++GW +Fv++n L +++f++F+++g+++f  +v +f++
  482495  19 FFKVLQRVDFSSENLRALPYDFVRSFSNN-ELSGKMKIKARWGSSWEVEI--CKNPRFyFMEKSGWVKFVRDNALGDNEFLTFTHKGKMRF--TVNIFKQ 113
             99***********************9877.5777****************..******555569********************9999999..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-1913115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2015119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-1918112No hitNo description
PfamPF023621.3E-1819113IPR003340B3 DNA binding domain
SMARTSM010195.3E-2219114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67619114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-16193287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-12193288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.811197290IPR003340B3 DNA binding domain
SMARTSM010193.8E-12200290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MARNSDYDMC KEERKRESFF KVLQRVDFSS ENLRALPYDF VRSFSNNELS GKMKIKARWG  60
SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGKMRFTVNI FKQDGKEMLQ  120
PPQSMASMAS SRRRRTKTEQ GISYLATTIT AESNGGENYT RKLNFEKKKA AESQNSKRTE  180
KVFSVRRDSA GASSSSVAEF TTFIKKSYLI FMRIPKSVQS IHMPMQRTIF KIHLPNMKKS  240
WNVVYLVADR GASFSGGWKR LAQEYPVAVG DTCKFSFIKQ HELILFVSKP *
Cis-element ? help Back to Top
SourceLink
PlantRegMap482495
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203530.0BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882942.10.0B3 domain-containing protein At2g35310 isoform X1
SwissprotQ5PNU41e-172Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLD7LHU80.0D7LHU8_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.4__1555__AT2G35310.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-168B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]