PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482294
Common NameARALYDRAFT_482294
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 259aa    MW: 29834.9 Da    PI: 10.0055
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482294genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.4e-51151371128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
             lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp      e+e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ + k+ +vg+k
  482294  15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CESERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGK-KKLVVGMK 112
             79****************************.99***************44...46799**********************************99.9999**** PP

     NAM 104 ktLvfykgrapkgektdWvmheyrl 128
             ktLvfykg+ p+g++t+Wv+heyrl
  482294 113 KTLVFYKGKPPNGTRTNWVLHEYRL 137
             ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6110160IPR003441NAC domain
PROSITE profilePS5100556.8315160IPR003441NAC domain
PfamPF023653.3E-2716137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKRSFIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL  60
PGDCESERYF FSTREAKYPN GNRSNRSTGS GYWKATGIDK QIGKKKLVVG MKKTLVFYKG  120
KPPNGTRTNW VLHEYRLVDS QQESSYGQNM NWVLCRVFLK KRSNSTNNKR KEDEKEEIEN  180
EKDKEKDTCP IFYDFMRKDM KKKRRRRRRC CDLNLTPATS TCCCSSSSSA SSSSVCSSAL  240
THTSSNNNHH ENKFCLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-541316315168NO APICAL MERISTEM PROTEIN
1ut4_B1e-541316315168NO APICAL MERISTEM PROTEIN
1ut7_A1e-541316315168NO APICAL MERISTEM PROTEIN
1ut7_B1e-541316315168NO APICAL MERISTEM PROTEIN
3swm_A1e-541316318171NAC domain-containing protein 19
3swm_B1e-541316318171NAC domain-containing protein 19
3swm_C1e-541316318171NAC domain-containing protein 19
3swm_D1e-541316318171NAC domain-containing protein 19
3swp_A1e-541316318171NAC domain-containing protein 19
3swp_B1e-541316318171NAC domain-containing protein 19
3swp_C1e-541316318171NAC domain-containing protein 19
3swp_D1e-541316318171NAC domain-containing protein 19
4dul_A1e-541316315168NAC domain-containing protein 19
4dul_B1e-541316315168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205KKKRRR
2200208KKKRRRRRR
3202207KRRRRR
4202208KRRRRRR
5203208RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap482294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250800.0AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds.
GenBankAF4102990.0AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.
GenBankAY0937300.0AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469465.11e-142PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-133NAC41_ARATH; NAC domain-containing protein 41
TrEMBLD7LGA80.0D7LGA8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1354__AT2G33480.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-113NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]