PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481881
Common NameARALYDRAFT_481881
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 374aa    MW: 41508.3 Da    PI: 8.5387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481881genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05126149123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              + C+ Cg+ F+r  +L++Hi   H
   481881 126 FHCNSCGEIFPRINLLENHIAIkH 149
              78******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.203126154IPR007087Zinc finger, C2H2
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-12151372No hitNo description
Gene3DG3DSA:3.90.228.102.0E-10155372IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAARKLGSLL RQYFFSLCFL FLGCFFFPKT ADHKQKRKKK KLRTVSSSSS GSALSSSWTY  60
LKRVFLSTTR ISKSRNQTHP NATLTSARSS QNSLVTLVQP DTSNQPDPET HIQQQTEFEI  120
SCSEIFHCNS CGEIFPRINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNHKS  180
PVINRILKIH NSQKILTRFE EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF  240
MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATFAT GWRGHVAVPE EVEEEFGFMN  300
VKRAMLVCRV VAGRVGCDLM DGDDVEKSDG GGYDSLVGQS GNKSGALLRF DDDELLVFNP  360
RAVLPCFVIV YTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642RKKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMap481881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054960.0AC005496.3 Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence.
GenBankAY0843790.0AY084379.1 Arabidopsis thaliana clone 106148 mRNA, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885173.10.0uncharacterized protein LOC9317130
TrEMBLD7LLB70.0D7LLB7_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.4__941__AT2G29660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.10.0C2H2 family protein