PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 481765 | ||||||||
Common Name | ARALYDRAFT_481765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 445aa MW: 48790.6 Da PI: 6.7933 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 151 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g 481765 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-9 | 151 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-15 | 151 | 208 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.82 | 152 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-17 | 152 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 152 | 214 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.66E-11 | 152 | 207 | No hit | No description |
SuperFamily | SSF54171 | 6.28E-6 | 243 | 288 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-10 | 243 | 288 | No hit | No description |
SMART | SM00380 | 5.7E-10 | 244 | 292 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MLDLNLDVDS PESTQYGGDS YLDRQTSDGS AGNRVEESGT STSSVINADG DEDSCSTRAF 60 TLSFDILKVG SSSGGDETSV AGVTKEFFPV SGDCGHLRDV EGSSSKSWID LSFDRFGDGE 120 TNLVAPVPVP TPAPVPAQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180 FDTAHAAARA YDRAAIKFRG VDADINFTLG DYEEDMKQVQ NLSKEEFVHI LRRQSTGFSR 240 GSSKYRGVTL HKCGRWEARM GQFLGKKAYD KAAINTNGRE AVTNFEMSSY QNEINSATNN 300 EGGHDKLDLN LGISLSSGNA SKQNGRLFHF PSNTYETQRG VSLRIDNEYM GKPVNTPLPY 360 GSSDHRAFWN GACPSYNNPV EGRATEKRSE VEGMMSNWGW QRPQPPGPQP PPLFSVAAAS 420 SGFSHFRPQP PNDNAARGYF YPQP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 481765 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325074 | 0.0 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. | |||
GenBank | AY050815 | 0.0 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. | |||
GenBank | AY091418 | 0.0 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884608.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 0.0 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | D7LJL5 | 0.0 | D7LJL5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__825__AT2G28550.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5861 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 0.0 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | 481765 |
Entrez Gene | 9315231 |