PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481138
Common NameARALYDRAFT_481138
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 322aa    MW: 35707.4 Da    PI: 6.6799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481138genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12133179455
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  481138 133 EHVLAERKRRQKLNERLIALSALLPGL-----KKTDKATVLEDAIKHLKQLQ 179
             5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.745129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15133192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-16133189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-12134183No hitNo description
SMARTSM003532.8E-14135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDSSFMDLM IDTDEYLIDD WESDFPIYGE TNTKPGSESG SGTGFELVPE RPTKQMKTNN  60
NINSTSSSPS SSSSSSCSRT SQVISFGSPD TKTNPVETSL NFSNQVSMDE KVGSKRKDCV  120
HNGGRREPHL LKEHVLAERK RRQKLNERLI ALSALLPGLK KTDKATVLED AIKHLKQLQE  180
RVKKLEEERV GTKNMDQSVI LVKRSQVYLD DDSSSYSSTC STASPLSSSS DEVSILKQTM  240
PMIEARVSGK DLLITVHCEK NKGCMIKILS SLENFRLEVV NSFTLPFGNS TIVITILSKM  300
DNKFSRPVEE VVKNIRLALA E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-12124201276Transcription factor MYC2
5gnj_B7e-12124201276Transcription factor MYC2
5gnj_E7e-12124201276Transcription factor MYC2
5gnj_F7e-12124201276Transcription factor MYC2
5gnj_G7e-12124201276Transcription factor MYC2
5gnj_I7e-12124201276Transcription factor MYC2
5gnj_M7e-12124201276Transcription factor MYC2
5gnj_N7e-12124201276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap481138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885640.0AF488564.1 Arabidopsis thaliana clone bHLH020 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885815.10.0transcription factor NAI1
SwissprotQ8S3F10.0BH020_ARATH; Transcription factor NAI1
TrEMBLD7LE350.0D7LE35_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__198__AT2G22770.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.10.0bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]