PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480366
Common NameARALYDRAFT_480366
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 329aa    MW: 36589.6 Da    PI: 5.0716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480366genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-102532931055
             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             r+RR+riN+++  L+ l+P+      +K+  +++Le+Av+Y+k Lq
  480366 253 RKRRERINERLRILQHLVPNG-----TKVHISTMLEEAVQYVKFLQ 293
             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.481243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13244309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-10249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-9252297No hitNo description
PfamPF000104.0E-7253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLAAYHHQ SSHWNGGFCF  60
SQESSSYSGY CTVMPRQEED NNGMEDATIN TNLYLVGEET SECDVTEYSG KSILPLETVA  120
ENHDHSMLQP ENSLTKTTDE KLFNPCESSK KRTRATSTDK NKRANKARRS QKGIEMSGDN  180
ENIGEEEYTE KAVGKRKTKP LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS  240
RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVHIST MLEEAVQYVK FLQLQIKLLS  300
SDDLWMYAPI AYNGMDIGLD LKLNALTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap480366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775840.0AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464970.0DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888660.10.0transcription factor bHLH84
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLD7L2Q60.0D7L2Q6_ARALL; Basic helix-loop-helix protein
STRINGfgenesh2_kg.3__3067__AT2G14760.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.10.0bHLH family protein