PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 480043 | ||||||||
Common Name | ARALYDRAFT_480043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 188aa MW: 21690.3 Da PI: 6.9177 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.7 | 3e-14 | 68 | 127 | 3 | 62 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e +r+rr+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + e 480043 68 EERRARRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLHEKVINLLESNHQILHE 127 678******************************************998888777766665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.3E-13 | 66 | 130 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.9E-12 | 67 | 123 | No hit | No description |
Pfam | PF00170 | 3.4E-13 | 68 | 128 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.277 | 68 | 131 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.75E-11 | 70 | 124 | No hit | No description |
CDD | cd14702 | 7.61E-16 | 71 | 122 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 73 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MESSSVHRSH CFDILDGVPL QDDHFSSAFL PNTDFNVQLN SISTRSNNQS HLDPNAENIF 60 HNEGLAPEER RARRMVSNRE SARRSRMRKK KQIEELQQQV EQLMMLNHHL HEKVINLLES 120 NHQILHENSQ LKEKASSFHL LMADVLLPMR NAESNINDRN VNYLRGETSN RPTNSPFVCS 180 TMIDAYM* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 480043 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB015472 | 0.0 | AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877227.1 | 1e-131 | LOW QUALITY PROTEIN: basic leucine zipper 43 | ||||
TrEMBL | D7L6V5 | 1e-134 | D7L6V5_ARALL; BZIP transcription factor family protein | ||||
STRING | fgenesh2_kg.3__2744__AT5G60830.1 | 1e-135 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6185 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60830.1 | 1e-108 | basic leucine-zipper 70 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 480043 |
Entrez Gene | 9319677 |