PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479930
Common NameARALYDRAFT_479930
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 271aa    MW: 29453.8 Da    PI: 7.3432
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479930genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19194228135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  479930 194 CQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRL 228
             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-16188238IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.136188224IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15191251No hitNo description
Gene3DG3DSA:3.30.50.102.9E-15192226IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.60E-14193240No hitNo description
PfamPF003202.9E-17194228IPR000679Zinc finger, GATA-type
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEMESFMDDL LNFSVPEEEE DDEENTQPPR NITRRKTGIR QTDSFGLFNT DDLGVVEEED  60
LEWISNKNAF PVIETFVGVL PLSPEREATE GKQLSPVSVL ETSSHSSTTT TATTSNSSGG  120
SNGSTAVATT ATTTTTIMSC CVGFKAPAKA RSKRRRTGRR DLGVLWTGNE QVGIQKRKTP  180
SVAAAAAMIM GRKCQHCGAE KTPQWRAGPA GPKTLCNACG VRYKSGRLVP EYRPANSPTF  240
TAELHSNSHR KIVEMRKQYQ SGDADRNDCG *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap479930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274930.0AK227493.1 Arabidopsis thaliana mRNA for GATA transcription factor 1, complete cds, clone: RAFL14-11-O16.
GenBankAP0012970.0AP001297.1 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13.
GenBankBT0244970.0BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankY136480.0Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888384.10.0GATA transcription factor 1
SwissprotQ8LAU91e-135GATA1_ARATH; GATA transcription factor 1
TrEMBLD7L4A30.0D7L4A3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2631__AT3G24050.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-117GATA transcription factor 1