PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 479637 | ||||||||
Common Name | ARALYDRAFT_479637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 298aa MW: 32795.6 Da PI: 6.7953 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.5e-17 | 219 | 255 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgpdg++tLCnaCGl+++ kg+ 479637 219 CRHCGISEksTPMMRRGPDGPRTLCNACGLMWANKGT 255 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 4.5E-13 | 73 | 108 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.217 | 73 | 108 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.9E-12 | 78 | 107 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.1E-15 | 143 | 185 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.898 | 143 | 185 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.011 | 213 | 261 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-10 | 213 | 280 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-13 | 215 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-15 | 218 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.1E-15 | 219 | 255 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 219 | 246 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.00E-15 | 219 | 268 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDELHGNNGR MHIGVAQDPM HVQYDHHGLH HIDNGNGMMD EHTDGGMDEG VETDIPSHPG 60 NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ AVLLLLGGRE VPQTLPTSLG 120 SPHQINRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG 180 QFTSAKSSND DSGSTGSDWG SNQNWAIEGT ETQKPEVLCR HCGISEKSTP MMRRGPDGPR 240 TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LPLNKNEDPN LEADQMNGVA DDISNSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 479637 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085109 | 0.0 | AY085109.1 Arabidopsis thaliana clone 12996 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889064.1 | 0.0 | GATA transcription factor 24 isoform X1 | ||||
Refseq | XP_020889065.1 | 0.0 | GATA transcription factor 24 isoform X1 | ||||
Swissprot | Q8GXL7 | 0.0 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | D7L007 | 0.0 | D7L007_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__2338__AT3G21175.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3684 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 0.0 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | 479637 |
Entrez Gene | 9319357 |
Publications ? help Back to Top | |||
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