PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

479503

Common Name

ARALYDRAFT_479503

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 288aa MW: 32199 Da PI: 8.4529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
479503	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.8e-09	7	55	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l + +K++Ka+iL+ +v+ +k+L 479503 7 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTVQLLKEL 55 5566779****************9987....69*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.268	5	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-13	5	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-13	5	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.41E-6	6	59	No hit	No description
Pfam	PF00010	9.2E-7	7	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-6	11	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN 60 KLKSEYTALT DESRELTQEK NDLREEKTSL KSEIENLNLQ YQQRLRSMSP WGAAMDHTVM 120 MAPPPSFPYP MPMAMPPGSI PMHPSMPSYT YFGTQNPSMI PAPCPTYMPF MPPNTVVEQQ 180 SVHIPQNPGN RSREPRAKVS RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR 240 CKRNNNNNNN NSVEESSHSS KCSSSPSVRD HSSSSSVAGG QKPDDAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	479503

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317507	0.0	AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBank	AY065107	0.0	AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBank	AY081703	0.0	AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889026.1	0.0	transcription factor bHLH121
Refseq	XP_020889027.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	1e-177	BH121_ARATH; Transcription factor bHLH121
TrEMBL	D7LA47	0.0	D7LA47_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.3__2204__AT3G19860.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-166	bHLH family protein

Link Out ? help Back to Top
Phytozome	479503
Entrez Gene	9321404

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]