PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479371
Common NameARALYDRAFT_479371
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 363aa    MW: 40763.5 Da    PI: 9.3101
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479371genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.3e-222673350
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
            + ++s r ++++kR+++++KKAeELS+LCd++v+vi + s+gkl++++
  479371 26 SASSSSRATSLIKRQATVFKKAEELSILCDIDVCVICYMSDGKLKTWP 73
            568999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-81374IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-1828107IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.7552876IPR002100Transcription factor, MADS-box
PfamPF003198.9E-162872IPR002100Transcription factor, MADS-box
CDDcd002669.42E-1736100No hitNo description
PRINTSPR004046.3E-63853IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-65374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASSSSSSLS SSSSKKKKNL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCDIDVCV  60
ICYMSDGKLK TWPDDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKEEEEKK  120
KKIKVRRVSR VKYPVWDPRF DNYSVEQLTG LVQSLERNLT RIQHRTHAVG EAQGQRRMQY  180
TNMASQELMM AHTMNQLQQH SNQVSMYLWN HDNGSFSQIP VSALASNQAQ SLAPIPSELM  240
IYPNSDVGSY SGSLGVQGTG INGLQTMNML TYNNINSVND FAKQIDQNSR VESYSSLLGV  300
HEYGNNEFEN TNMSSRNNFN VQDYAGLLGV EGTVTGTNGL QSMNMHDYNN NNNSNANGLS  360
HQL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap479371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266540.0AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11.
GenBankBT0295490.0BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885269.20.0LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103
SwissprotQ9LSB20.0AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLD7L9330.0D7L933_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__2072__AT3G18650.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-171AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]