PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478482
Common NameARALYDRAFT_478482
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 631aa    MW: 71889.6 Da    PI: 8.6527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478482genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-09573617345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W+t  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
           478482 573 SWSTVQERALVQALKTFPKEtsqRWERVAAAVP-GKTMNQCKKKFA 617
                      7********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.6E-2195197IPR001623DnaJ domain
SuperFamilySSF465651.19E-2097177IPR001623DnaJ domain
SMARTSM002713.8E-1798173IPR001623DnaJ domain
PfamPF002262.0E-1799178IPR001623DnaJ domain
PROSITE profilePS5007618.30399181IPR001623DnaJ domain
CDDcd062572.41E-1399170IPR001623DnaJ domain
PRINTSPR006251.7E-8104122IPR001623DnaJ domain
PRINTSPR006251.7E-8122137IPR001623DnaJ domain
PRINTSPR006251.7E-8153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.156441496IPR017877Myb-like domain
SuperFamilySSF466893.07E-7443489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-5445488IPR009057Homeodomain-like
SMARTSM007173.1E-6445498IPR001005SANT/Myb domain
PfamPF002497.9E-6446488IPR001005SANT/Myb domain
CDDcd001676.10E-4448488No hitNo description
SMARTSM007178.7E-9570622IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-9572626IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-5573618IPR009057Homeodomain-like
CDDcd001672.40E-6573620No hitNo description
PfamPF002499.8E-8573618IPR001005SANT/Myb domain
PROSITE profilePS500907.189573620IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MPSRRSESAV KLITYSEELE DGKPFVAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDDEGVDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK  120
SYREAALKHH PDKLATLLLA EETEEAKEAK KDEIESRFKA IQEAYEILMD PTRRRIFDST  180
DEFDDEVPSD CLPQDFFKVF GAAFKRNARW SVNQRIPDLG DENTTLKDVD KFYNFWYAFK  240
SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK  300
RKEEEKAEKQ QKKEAKLLAK KKQAEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEKEK  360
KLLRKERNRL RTLSAPLVAQ RLLGISEEDI ENLCMSLNTE QLQNLYGCDS SRNDEAESKE  420
KESKKTNGGT EPTPQVSQLD SSTQKKQPWS KEEIDMLRKG MIKYPKGTSR RWEVVSEYIG  480
TGRSVEEILK ATKTVLLQKP DSAKAFDSFL EKRKPSASIS SPLSTREELG ESLPTVTTTA  540
NAKPSKETVV GKSSSSQSSD NNGEVGGSSD ADSWSTVQER ALVQALKTFP KETSQRWERV  600
AAAVPGKTMN QCKKKFAELK EIIRNKKTGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-1419529820123Zuotin
5dje_B9e-1419529820123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKQAEDAAIAAEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap478482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888337.10.0LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 2
TrEMBLD7LAN20.0D7LAN2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1183__AT3G11450.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain