PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477978 | ||||||||
Common Name | ARALYDRAFT_477978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19684.2 Da PI: 5.8271 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.7 | 1.8e-19 | 4 | 50 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y + 477978 4 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF 50 6788899*********************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.446 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-22 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.1E-22 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-23 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-10 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-10 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MEKVQDTNTK QVTFSKRRLG LFKKASELAT LCNAEVGIVV FSPGNKPYSF GKPNFDLIAE 60 RFKNEFEEEE EADSCETSGY SRGKRARQEK KICKRLNSII EEAEAEKKHG EDLHKWLESA 120 QQDRFNKPIE ELTLEELKEF EAKIQETRCG IQSNINHMQA SSSLMFLSKD N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477978 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC036106 | 0.0 | AC036106.6 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056634 | 0.0 | DQ056634.1 Arabidopsis thaliana MADS-box family protein (At3g66656) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884601.2 | 1e-123 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 2e-58 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | D7L5Y2 | 1e-122 | D7L5Y2_ARALL; MADS-box family protein | ||||
STRING | fgenesh2_kg.3__679__AT3G66656.1 | 1e-123 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 1e-102 | AGAMOUS-like 91 |
Link Out ? help Back to Top | |
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Phytozome | 477978 |
Entrez Gene | 9318553 |
Publications ? help Back to Top | |||
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