PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477944 | ||||||||
Common Name | ARALYDRAFT_477944 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 455aa MW: 48054.7 Da PI: 7.9226 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ 477944 51 DEPDCIYYLRTGVCGYGSRCRFNHPR 76 6899********************96 PP | |||||||
2 | zf-CCCH | 37.2 | 5.1e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ 477944 98 HPVCQHFMRTGTCKFGASCKYHHPR 122 789********************96 PP | |||||||
3 | zf-CCCH | 37.5 | 3.8e-12 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G +C+F+H+ 477944 145 GEKECSYYLRTGQCKFGLTCRFNHP 169 7899********************9 PP | |||||||
4 | zf-CCCH | 40 | 6.3e-13 | 299 | 323 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ 477944 299 DQPECQYFMRTGDCKFGSSCRYHHP 323 689*********************9 PP | |||||||
5 | zf-CCCH | 31.6 | 2.8e-10 | 345 | 370 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +f++ G+Ck+G+ C+F H++ 477944 345 GVAQCTHFSQHGICKFGPACRFDHSM 370 6788********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.239 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 96 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 145 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 149 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.854 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 299 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 303 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-8 | 345 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 346 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-4 | 349 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MERYGRAGEE GSRSDPSLEW TSHGGETGLE ASMWRLGLSG GGGESYPERP DEPDCIYYLR 60 TGVCGYGSRC RFNHPRDRGA VIGGVRGEAG ALPERMGHPV CQHFMRTGTC KFGASCKYHH 120 PRQGGGGGSV APVSLSYLGY PLRPGEKECS YYLRTGQCKF GLTCRFNHPV PLAVQGPPQH 180 QQQQQPQLQT IYPTLQSQSV PSSQQYGLVL TRPSLLPGSY LPSPYGPPMV LPPGMVPYSG 240 WNPYQASLSA MPSPGTQPSI GSSSVYGITP LSPSVTAYTG AYQSGPSSNT SKEFPQRPDQ 300 PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGLVLSSIGL PLRPGVAQCT HFSQHGICKF 360 GPACRFDHSM SSSLSYSPSA SSLTDMPVAP YPIGSSSLSG SSAPVSSSNE PTTEAVTAAA 420 VSTSMVSGLS RPEPAETSGD SASVSGSIEA KTSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477944 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK230438 | 0.0 | AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884577.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q9SQU4 | 0.0 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | D7L5G8 | 0.0 | D7L5G8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__645__AT3G06410.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 477944 |
Entrez Gene | 9318535 |
Publications ? help Back to Top | |||
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