PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477545
Common NameARALYDRAFT_477545
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 461aa    MW: 51037.9 Da    PI: 4.5395
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477545genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.2e-35161082103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ l++i 
        477545  16 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQILKSIV 103
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
        477545 104 RRKPS 108
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3810100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGESVATAVM SSIPPFLSKT YDMVDDPLTD DVVSWSSGNN SFVVWNVPEF AKQFLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKQILK SIVRRKPSQV QPPQQPQVQH  120
SSVGACVEVG KFGLEEEVER LQRDKNVLMQ ELVRLRQQQQ VTEHHLQNVG QKVHVMEQRQ  180
QQMMSFLAKA VQSPGFLNQF SQQSNDANQH ISESNKKRRL PVEDQMNSGS HGVSGLSRQI  240
VRYQSSMNDA TNTMLQQIQQ MSNSPSHESL SSNHGSFLLG DVPNSNLSDN GSSSNGSSGV  300
TLADVSSIPA GLYPAMKYHD PCETNQVLET NLPFSQGDLL PPTQGVAASG SSSSDLVGCE  360
TDNGECLDPI MAVLDGAIEL EADALNELLP EVQDCFWEQF IGESPVIGET DELISGSVEN  420
ELLMEQLELQ SGLGSVWSKN QQMNYLTEQM GLLTSDTLRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-261110524129Heat shock factor protein 1
5d5v_B1e-261110524129Heat shock factor protein 1
5d5v_D1e-261110524129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap477545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889453.10.0heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLD7L0B60.0D7L0B6_ARALL; ATHSFA1E
STRINGfgenesh2_kg.3__246__AT3G02990.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]