PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477146 | ||||||||
Common Name | ARALYDRAFT_477146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 305aa MW: 34575.3 Da PI: 8.5193 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.6e-16 | 51 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ +++++g ++ +e Aa+a++ a++k++g 477146 51 SPYRGVTRHRWTGRYEAHLWDkNSWNEtqtKKgRQVYIGAYDEEEAAARAYDLAALKYWG 110 68*******************888877878557*************************98 PP | |||||||
2 | AP2 | 52.6 | 1.1e-16 | 153 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g 477146 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 204 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-16 | 51 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.0E-25 | 52 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.415 | 52 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 53 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 53 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-16 | 53 | 118 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 153 | 204 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.57E-14 | 153 | 214 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 153 | 214 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-25 | 154 | 218 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.241 | 154 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 154 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 194 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAKVSRRSKK TIVEDEISDK TASASEAASI VFKSKRKRKS PPRNAPPQRS SPYRGVTRHR 60 WTGRYEAHLW DKNSWNETQT KKGRQVYIGA YDEEEAAARA YDLAALKYWG RDTLLNFPLL 120 IYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL 180 YLGTYATQEE AAIAYDIAAI EYRGLNAVTN FDVSRYLNPD AADSKPIRND PESSDDNKCP 240 KSEEIIEPST SPEAITTRRS FPDDIQTYFG CQDSGKLATE EDVIFGGLNS FINPGFYNEF 300 DYGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477146 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117300 | 0.0 | AK117300.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL16-86-I04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890546.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 isoform X1 | ||||
Refseq | XP_020890547.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 isoform X1 | ||||
Swissprot | A0JPZ8 | 1e-172 | AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | D7KWL4 | 0.0 | D7KWL4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__2276__AT1G79700.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-151 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 477146 |
Entrez Gene | 9323865 |