PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475419

Common Name

ARALYDRAFT_475419

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 390aa MW: 41505.5 Da PI: 6.6331

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475419	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.4	2.4e-42	45	211	2	126
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ 475419 45 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvplygalglth 147 5789***************************************************************9998888888888866666777888999999999 PP TCP 89 ........................kaaksaakskksqksaasalnlakesrakarar..arert 126 +++++++++++q++ ++ + + sr++ r+ ++e++ 475419 148 qydeqggggvfaahttpllgfhhhLQQQQHHHQNQNQDPVETIPEGENFSRKRYRSVdlSKEND 211 9999999***9999988887654444444555555555555555556665555553322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-42	50	212	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	51	105	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDRNNDTAAV TGGGARQLVD ASLSIVPRST PLEDSTLATT SSTTTTTKRS TKDRHTKVDG 60 RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLSV 120 SLRSSGSTLS APPSKSVPLY GALGLTHQYD EQGGGGVFAA HTTPLLGFHH HLQQQQHHHQ 180 NQNQDPVETI PEGENFSRKR YRSVDLSKEN DDRKQNENKS LKESETPGPA AAPMWAVAPP 240 SRSGAANTFW MLPVPTTTGN QMESSSNNTT TAGHRAPPMW PFVNSAGGGA GGGGGAATHF 300 MAGTGFSFPM DQYRGSPLQL GSFLAQPQPT QNLGLSMPDS NLGMLAALNA AYSRGGNANA 360 DAEQANNAVE HQEKQQQSDH DDDSREENSN

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDRNNDTAAV TGGGARQLVD ASLSIVPRST PLEDSTLATT SSTTTTTKRS TKDRHTKVDG  60
RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLSV  120
SLRSSGSTLS APPSKSVPLY GALGLTHQYD EQGGGGVFAA HTTPLLGFHH HLQQQQHHHQ  180
NQNQDPVETI PEGENFSRKR YRSVDLSKEN DDRKQNENKS LKESETPGPA AAPMWAVAPP  240
SRSGAANTFW MLPVPTTTGN QMESSSNNTT TAGHRAPPMW PFVNSAGGGA GGGGGAATHF  300
MAGTGFSFPM DQYRGSPLQL GSFLAQPQPT QNLGLSMPDS NLGMLAALNA AYSRGGNANA  360
DAEQANNAVE HQEKQQQSDH DDDSREENSN

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475419

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079131	0.0	AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBank	AC079604	0.0	AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBank	AY081344	0.0	AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBank	BT008493	0.0	BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891334.1	0.0	transcription factor TCP8
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	D7KY84	0.0	D7KY84_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.2__549__AT1G58100.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	0.0	TCP family protein

Link Out ? help Back to Top
Phytozome	475419
Entrez Gene	9322768

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]