PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475358

Common Name

ARALYDRAFT_475358

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 143aa MW: 16461.7 Da PI: 6.5342

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475358	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.7	1.1e-12	44	90	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+ rr ++NRe+A+rsR++Kk++ eeL+e+v L + N++Lk++l + 475358 44 KKRRRTISNRESAKRSRLKKKKRFEELTEEVNRLNQRNEELKNRLAN 90 899***************************************77754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-12	40	111	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-12	42	90	No hit	No description
PROSITE profile	PS50217	11.128	42	91	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-9	44	91	No hit	No description
Pfam	PF00170	2.1E-10	44	90	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	47	62	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
PVHICFDDHD TITGDEITEI LAFLQSDESG IPSGTNELVP VDEKKRRRTI SNRESAKRSR 60 LKKKKRFEEL TEEVNRLNQR NEELKNRLAN VVSCGNFISS ENNRLKTESV CLEIRLLELY 120 RFLVAIQSPI STRVNYITEL EI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	65	RRRTISNRESAKRSRLKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475358

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009317	1e-136	AC009317.4 Genomic sequence for Arabidopsis thaliana BAC T30E16 from chromosome I, complete sequence.
GenBank	AC027036	1e-136	AC027036.12 Arabidopsis thaliana chromosome 1 BAC T4M14 genomic sequence, complete sequence.
GenBank	AF400619	1e-136	AF400619.1 Arabidopsis thaliana transcription factor-like protein bZIP4 mRNA, complete cds.
GenBank	CP002684	1e-136	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888203.2	3e-98	basic leucine zipper 4
Swissprot	Q9LQ65	2e-73	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	D7KXV3	6e-97	D7KXV3_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.2__488__AT1G59530.1	1e-97	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	8e-65	basic leucine-zipper 4

Link Out ? help Back to Top
Phytozome	475358
Entrez Gene	9324266

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]