PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475161
Common NameARALYDRAFT_475161
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 398aa    MW: 43446.5 Da    PI: 6.5102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062843221154
             HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
              R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  475161 284 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 322
             5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-9283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-6283326No hitNo description
SuperFamilySSF474592.49E-11283337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MADEFRATAA ICGGGGGAWW NSPRSVMSPS DHFLSPCFGA SITSDDFTSQ ENNLKARMTC  60
TDNNNNNNIV FGQREADSDS GGSTVTMDST LQMMGLGFSS NSSSDWSQTI LQEDLNSSFI  120
RSSQDQDHGQ GFLSTTTSPY ILNPACSSSP STSSSSSLLR TFYEPEPSPY NFVSTTSGSI  180
NDHQLSWANK TNPHHQASYG LTNNFSNNAN SRPFWSSSST TNLNNTTPNN FVTTPQIIST  240
RLEDKTKNLK TRAQSESLKR TKDSESAAKK PRVTTPSPLP TFKVRKENLR DQITSLQQLV  300
SPFGKTDTAS VLQEAIEYIK FLHDQVTVLS TPYMKQGASS QQQQQQISGK SKNQDGNENH  360
ELRGHGLCLV PISSTFPVAN ETTADFWTPT FGGNNFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ESLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMap475161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806490.0AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY1130720.0AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890088.10.0transcription factor bHLH112
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLD7KVI10.0D7KVI1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__291__AT1G61660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]