PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474440
Common NameARALYDRAFT_474440
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 193aa    MW: 20962.7 Da    PI: 10.1254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474440genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-192574255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta++Aa+a++aa++ ++g
  474440 25 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDAAARDFRG 74
            59*******.**********654...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-202582No hitNo description
PfamPF008471.5E-122574IPR001471AP2/ERF domain
PROSITE profilePS5103223.962582IPR001471AP2/ERF domain
SMARTSM003804.3E-352588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-322582IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-222583IPR016177DNA-binding domain
PRINTSPR003673.7E-112637IPR001471AP2/ERF domain
PRINTSPR003673.7E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGSKPDPVAP TNPTRHESNA AKEIRYRGVR KRPWGRYAAE IRDPVKKTRV WLGTFDTAQQ  60
AARAYDAAAR DFRGSKAKTN FPTFLELNGK TEGVFVGSPT QSSTVIDSTS PTAPRFVTPP  120
QLELSLGGGA CRRKIPLVRP IYYFNMTAYP RKMTACGVQS ESETSSVLDF EGGAGKISQP  180
LDLDLNLAPP AE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-202082972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00202DAPTransfer from AT1G53170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap474440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0368841e-109AB036884.1 Arabidopsis thaliana AtERF8 mRNA for ERF transcription factor8, complete cds.
GenBankAC0080071e-109AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBankAC0225201e-109AC022520.2 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence.
GenBankAK1175411e-109AK117541.1 Arabidopsis thaliana At1g53170 mRNA for putative ethylene responsive element binding factor 8 (ERF8), complete cds, clone: RAFL17-19-H19.
GenBankBT0054011e-109BT005401.1 Arabidopsis thaliana clone U50346 putative ethylene responsive element binding factor 8 (At1g53170) mRNA, complete cds.
GenBankCP0026841e-109CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867199.11e-140ethylene-responsive transcription factor 8
SwissprotQ9MAI54e-97ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLD7KKE61e-139D7KKE6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4394__AT1G53170.11e-140(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.15e-88ethylene response factor 8
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]