PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

474229

Common Name

ARALYDRAFT_474229

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 379aa MW: 41831.6 Da PI: 7.1124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
474229	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	315	360	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq 474229 315 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 360 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	309	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	312	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.37E-12	313	364	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-15	314	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-9	315	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-14	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0042335	Biological Process	cuticle development
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS 60 GFLQTTDTSN NVDSFLHHTF NSDGTEKKPP EVKTEEDETE IPVTVTTMEV VSGEISVNPE 120 ESIGYVASVS RSLGQNKRPR EKDDRTPVNN LARHNSSPAG LFSSIDVETA YAAVMKSMGG 180 FGGSNVMNTS TTEASSLTPR SKLLPPTSRA MSPISEVDVK PGFSARLPPR TLSGGFNRSF 240 GNEGSASSKL TAIARTQSGG LDQYKTKDED SASRRPPLAH HMSLPKSLSD IEQLLSDSIP 300 CKIRAKRGCA THPRSIAERV RRTKISERMR KLQDLVPNMD TQTNTADMLD LAVQYIKDLQ 360 EQVKTLEETR ARCRCSSA*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS  60
GFLQTTDTSN NVDSFLHHTF NSDGTEKKPP EVKTEEDETE IPVTVTTMEV VSGEISVNPE  120
ESIGYVASVS RSLGQNKRPR EKDDRTPVNN LARHNSSPAG LFSSIDVETA YAAVMKSMGG  180
FGGSNVMNTS TTEASSLTPR SKLLPPTSRA MSPISEVDVK PGFSARLPPR TLSGGFNRSF  240
GNEGSASSKL TAIARTQSGG LDQYKTKDED SASRRPPLAH HMSLPKSLSD IEQLLSDSIP  300
CKIRAKRGCA THPRSIAERV RRTKISERMR KLQDLVPNMD TQTNTADMLD LAVQYIKDLQ  360
EQVKTLEETR ARCRCSSA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00195	DAP	Transfer from AT1G51140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	474229

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY034941	0.0	AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBank	AY063120	0.0	AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869674.1	0.0	transcription factor bHLH122
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	D7KHN3	0.0	D7KHN3_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.1__4183__AT1G51140.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	474229
Entrez Gene	9327682

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]