PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472750
Common NameARALYDRAFT_472750
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 374aa    MW: 41680.2 Da    PI: 8.5465
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472750genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-05931123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C+k F++  +L  Hir H
   472750  9 FTCKYCHKKFPSGKSLGGHIRIH 31
             89*******************99 PP
2zf-C2H212.80.000377087320
             ETTTTEEESSHHHHHHHH CS
  zf-C2H2  3 CpdCgksFsrksnLkrHi 20
             C  Cgk+F +   L+ H+
   472750 70 CRECGKVFVSLKALRGHM 87
             9****************9 PP
3zf-C2H212.60.00042327349123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+C k+F++   L  H r+H
   472750 327 HECPICFKMFKSGQALGGHKRSH 349
              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-7536No hitNo description
Gene3DG3DSA:3.30.160.606.0E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.3936IPR007087Zinc finger, C2H2
SMARTSM003550.0092931IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-7927IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0556890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5776896IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-76990No hitNo description
PfamPF139129.5E-87091IPR007087Zinc finger, C2H2
PROSITE patternPS0002807091IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-7322349No hitNo description
SMARTSM003550.17327349IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432327354IPR007087Zinc finger, C2H2
PfamPF139126.2E-10327350IPR007087Zinc finger, C2H2
PROSITE patternPS000280329349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEGKEKLFT CKYCHKKFPS GKSLGGHIRI HTNENSVGSD RYNAKKKKKR LVDQRKMMAQ  60
KQKQQQQVGC RECGKVFVSL KALRGHMACH HCEGKKMLMD SQSDTETETS SAPIRKRSKR  120
VVMKRSNSES FSNGSSSFVS EIDQEVRDAA DTLMFLSSDS RSFKKRRDLV MNSLGESSDN  180
DSSVVETKSS SGDELKIFNV KNQVLETGKV GVDDHLRSDD DDDGVSLCDS DDSDSDYFIN  240
GPSKSDSDIS VDKNTGFGSG FNNSLNRFRN SNEGGSKYEL SKSKRALFSY ETESCADTNS  300
KIHHRFRDSK SSVVKKESDE KKTSKGHECP ICFKMFKSGQ ALGGHKRSHS IANQVADTRN  360
QIDLNLTDSD TDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap472750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893394.10.0zinc finger protein ZAT9
RefseqXP_020870380.10.0zinc finger protein ZAT9
TrEMBLD7KQN90.0D7KQN9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2704__AT1G26590.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-125C2H2-like zinc finger protein