PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 472210 | ||||||||
Common Name | ARALYDRAFT_472210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 904aa MW: 99570.2 Da PI: 6.0537 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l+v+v 472210 159 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLMVGV 257 99*********************999****996444444..8************************************************..4577778**** PP E-S CS B3 97 frk 99 +r+ 472210 258 RRA 260 *97 PP | |||||||
2 | Auxin_resp | 111.6 | 7.9e-37 | 285 | 368 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F ++YnPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+ 472210 285 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 368 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-45 | 152 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-42 | 152 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.76E-23 | 158 | 259 | No hit | No description |
SMART | SM01019 | 1.1E-25 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-22 | 159 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.9E-32 | 285 | 368 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.0E-9 | 789 | 880 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.172 | 794 | 878 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.95E-7 | 808 | 873 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MASLSCVEDK MKTSCLVNGG GTITTTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA 60 GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP NLPSQLMCQV HNVTLHADKD 120 SDEIYAQMSL QPVHSERDVF PVPDFGMLRG GSKHPTEFFC KTLTASDTST HGGFSVPRRA 180 AEKLFPPLDY TAQPPTQELV VRDLHENTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG 240 DSVLFIRDEK SQLMVGVRRA NRQQTALPSS VLSADSMHIG VLAAAAHATA NRTPFLIFYN 300 PRACPAEFVI PLAKYRKAIC GSQLSVGMRF GMMFETEDSG KRRYMGTIVG ISDLDPLRWP 360 GSKWRNLQVE WDEPGCNDKP TRVSPWDIET PESLFIFPSL TSGLKRQLHP SYFAGETEWG 420 SLIKRPLIRV PDSANGIMPY ASFPNMASEQ LMKMMMRPHN NQNVPSFMSE MQQNVVMGHG 480 GLLGDMKMQQ PMMMSRKSEM LQPQNKLTVN PSASNSSGQE QNLSQSMSAP AKPDNSTLSG 540 CSSGRVEHGL EQSMEQASQA TTSTVCNEEK VNQLLQKPGA SSPVQADPCL DISQQIYPPQ 600 SDPINGFSFL ETDELTSQVS SFQSLAGSYK QPFMLSSQDS SAVGLPDSTN SPVFHDVWDN 660 QLNGLKFDQF SPLMQQDLYA SQNICMSNST TSNILDPPLS NTVLDDFCAI KETDFQNHPS 720 SCLVGNNNTS FAQDVQSQIT SASFADSQAF SRQDFPDNSG GTGTSSSNVD FDDSSLLQNS 780 KGSSWKKIAT PRVRTYTKVQ KTGSVGRSID VTSFKDYKEL KSAIECMFGL EGLLTQPQSS 840 GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPTEVQ QMSEEGMKLL NSAGINDLKT 900 SVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 393 | 2 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 472210 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334716 | 0.0 | AF334716.1 Arabidopsis thaliana clone C00027 (h) auxin response factor 5 (At1g19850) mRNA, complete cds. | |||
GenBank | BT002050 | 0.0 | BT002050.1 Arabidopsis thaliana transcription factor (At1g19850) mRNA, complete cds. | |||
GenBank | BT008805 | 0.0 | BT008805.1 Arabidopsis thaliana At1g19850 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866993.1 | 0.0 | auxin response factor 5 isoform X1 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | D7KI68 | 0.0 | D7KI68_ARALL; Auxin response factor | ||||
STRING | fgenesh2_kg.1__2164__AT1G19850.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | 472210 |
Entrez Gene | 9329137 |