PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471403
Common NameARALYDRAFT_471403
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 181aa    MW: 20782.1 Da    PI: 9.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471403genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-161668155
            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
            +r++h+e Er+RR++i s f +Lr llP+     +++K s a+ + +Av+YIk+Lq
  471403 16 KRAKHKELERQRRQEITSLFKNLRYLLPSqY---TKGKRSSADHVLEAVNYIKDLQ 68
            79***************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-161289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-111372No hitNo description
PROSITE profilePS5088814.4051567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-131668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-131685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-52173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVTSEIREGD DEPKNKRAKH KELERQRRQE ITSLFKNLRY LLPSQYTKGK RSSADHVLEA  60
VNYIKDLQKK IKEVSKKRDR IKRSITHPSS TGECSIISLT SSTCSCTCWR HTHCCYRSKL  120
LLQTRILSLK CSSTSGRRAI NALMLIVHTI VSEVEEGIEV YYSELQENII KMGTTYVVML  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11527KRAKHKELERQRR
26782QKKIKEVSKKRDRIKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap471403
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885891e-119AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869346.15e-91LOW QUALITY PROTEIN: transcription factor bHLH55
SwissprotQ9LN959e-73BH055_ARATH; Transcription factor bHLH55
TrEMBLD7KND71e-128D7KND7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__1357__AT1G12540.11e-129(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.19e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]