PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 470147 | ||||||||
Common Name | ARALYDRAFT_470147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 592aa MW: 66012 Da PI: 6.5826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 434 | 479 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L Av YI++L 470147 434 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 479 799***********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.9E-53 | 48 | 236 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.136 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-18 | 433 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.17E-14 | 433 | 484 | No hit | No description |
Pfam | PF00010 | 2.0E-10 | 434 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-18 | 434 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-16 | 436 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 592 aa Download sequence Send to blast |
MNIGRVVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TSGSDENLQN KLSDLVERPN 60 ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS EIVRILSMGR EEETHQTMRK 120 RVLQKLHDLF GGLEEENCAL GLDRVTDTEM FLLSSMYFSF PQGEGGPGKC FASGKPVWLS 180 DVVNSGSDYC VRSFLAKSAG IQTVVLVPTD LGVVELGSTS CLPESEESIL SIRSLFSSSL 240 PPVRAVTAVA LPEKIDDNRT VNASKIFGKD LHNSGFLHHH QFHQQQPQQQ QQQHRQFREK 300 LTVRKMDDRA PKRVDAYPNN GNRFMFSNPG TNNNTLLSPT WVQPENYTRP INVKEVPSTD 360 EFKFLPLQQS SQRLLPPAQM QIDFSAASSR ASENNSDGEG GGEWADAVGA DDNGNNKPRK 420 RGRRPANGRV EALNHVEAER QRREKLNQRF YALRSVVPNI SKMDKASLLG DAVSYINELH 480 AKLKVMEAER ERLGYSSNPP ISLESDINVQ TSGEDVTVRI NCPLESHPAS RIFHAFEETK 540 VEVMNSNLEV SQDTVLHTFV VKSEELTKEK LISALSREPS NSVQSRTSSG R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 8e-26 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 470147 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC023628 | 0.0 | AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence. | |||
GenBank | AF251698 | 0.0 | AF251698.1 Arabidopsis thaliana putative transcription factor BHLH13 mRNA, complete cds. | |||
GenBank | AY079012 | 0.0 | AY079012.1 Arabidopsis thaliana At1g01260/F6F3_25 mRNA, complete cds. | |||
GenBank | AY120752 | 0.0 | AY120752.1 Arabidopsis thaliana transcription factor MYC7E, putative (At1g01260) mRNA, complete cds. | |||
GenBank | BT004517 | 0.0 | BT004517.1 Arabidopsis thaliana At1g01260/F6F3_25 gene, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870176.1 | 0.0 | transcription factor bHLH13 | ||||
Refseq | XP_020870177.1 | 0.0 | transcription factor bHLH13 | ||||
Swissprot | Q9LNJ5 | 0.0 | BH013_ARATH; Transcription factor bHLH13 | ||||
TrEMBL | D7KQ94 | 0.0 | D7KQ94_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.1__101__AT1G01260.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 470147 |
Entrez Gene | 9328139 |
Publications ? help Back to Top | |||
---|---|---|---|
|