PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 356279 | ||||||||
Common Name | ARALYDRAFT_356279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 478aa MW: 53509.4 Da PI: 7.0617 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.3 | 3.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ 356279 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-9 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 4.21E-17 | 6 | 63 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.5E-13 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.4E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.5E-10 | 235 | 335 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEGDEIEIE 60 DHRAQRVMIK GMSLNKKILK RKPYQENFTV KRANLEFHTG FKRKVLDEEA SNRSSSGSVV 120 SNSESCAQSN AWDATFPCKR RTCVGRPKAA SSVEKLTKDL YTILQEQQSS CLSGTSEEDL 180 LFESETPMLL GHGSVLMRDP HPGAREEESE ASSLLVESSK SSSVHSVKFG GKAIKQEQLK 240 RSKSQVLGRH SSLLCSIDLK DVFNFDEFIE KFTEEEQQKL MKLLPQVDSV DRPDSLRSMF 300 ESSQFKENLS LFQQLVADGV FETTSSYSSG SKLEDIKTLA KLALSDPYKS HLLESYYMLK 360 EQKKRTEDSV TTTSKVSNLS PSKNNSLVTI ERPCESLNQN FSETRDVMRS PKEVMKIRSK 420 HIETKEILEN SVSSFKPMSC GGPLVFSYED NDISDQDLLL DVPSNGSFPQ AELLHMI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 356279 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020259 | 0.0 | BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds. | |||
GenBank | BT020450 | 0.0 | BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865139.1 | 0.0 | GATA transcription factor 27 isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | D7MPX3 | 0.0 | D7MPX3_ARALL; Zinc finger family protein | ||||
STRING | fgenesh1_pg.C_scaffold_8000066 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
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Phytozome | 356279 |
Entrez Gene | 9301213 |