PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 355494
Common NameARALYDRAFT_355494
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 500aa    MW: 56701 Da    PI: 9.9957
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
355494genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.1e-1326951694
            EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
            + +pk f +++  g ++ +     l++  s  +W++k+  ++++    +tkGW+eF+  ++L++gD++vF+++g+    l++
  355494 26 ILIPKAFYSKYleGRQEGN--AAELRSdASEITWNIKI--DGRR----MTKGWEEFAVGHNLQVGDILVFRHEGN----LLF 95
            789********96555444..5666554999*******..9998....9**********************7663....333 PP
2B356.26.1e-18375459490
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
             v ++ ++l++++l+lp +  +++ ++k+   +++l++++gr+W++ l+y+k+sg++ +t GWk+F++ang ++g +++F l+++ ++
  355494 375 VSVTVSNLREDILYLPIRLSRSNILDKKF-HEISLMNKQGRTWTLSLKYSKSSGKFRITHGWKSFCEANGQNAGCTFLFNLVRN-RT 459
             56788999***************888766.49************************************************9985.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-177105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-187105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.43411103IPR003340B3 DNA binding domain
CDDcd100172.22E-1312100No hitNo description
SMARTSM010194.9E-1614103IPR003340B3 DNA binding domain
PfamPF023626.1E-92694IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-6245329IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-6250332No hitNo description
SuperFamilySSF1019363.34E-8250329IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-8251334IPR003340B3 DNA binding domain
PROSITE profilePS508636.076292334IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19368464IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17368463IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.789372468IPR003340B3 DNA binding domain
SMARTSM010191.2E-19373469IPR003340B3 DNA binding domain
PfamPF023623.5E-16374461IPR003340B3 DNA binding domain
CDDcd100176.93E-13382464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MANSMFSSSA KPHFLKPILP GFKTYILIPK AFYSKYLEGR QEGNAAELRS DASEITWNIK  60
IDGRRMTKGW EEFAVGHNLQ VGDILVFRHE GNLLFHVTPF GLSCCEILYS QNDEKVVKDK  120
TGKVTRYKTV KKTAKNECSS VDTDFVYLPR GFTTSSGLSK LCNEIILMDE KSRPSTLKLC  180
YHKSRKPPVL RIYPLERDED NIGNHSKKIK QEVEHETVKE ETNVESGKLK RDGLLKKDPQ  240
KVCSSSHDTI FVVPGTASNQ RNDSFHLPKG FTTSSGLSKL CKKIIFMDEK DNRFTVRRGW  300
RGFCCRNGHK TGCFLRLILV RNGKTPVLRI FPLEKDESSI GKNSKEIKQE VEHESAKEEK  360
NVESLSLSDN SSFVVSVTVS NLREDILYLP IRLSRSNILD KKFHEISLMN KQGRTWTLSL  420
KYSKSSGKFR ITHGWKSFCE ANGQNAGCTF LFNLVRNRTS PVLLMTSLWD DIHQSKTASF  480
DNSVGPRRSS MGQEVKIMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap355494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0464321e-114AB046432.1 Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F22D12.
GenBankCP0026881e-114CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF18O91e-114AF296831.1 Arabidopsis thaliana BAC F18O9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874848.10.0LOW QUALITY PROTEIN: B3 domain-containing protein REM-like 3
SwissprotF4KFT60.0REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLD7MHL00.0D7MHL0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70026670.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17423910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.10.0B3 family protein