PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 354244
Common NameARALYDRAFT_354244
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 223aa    MW: 24840.1 Da    PI: 9.3502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
354244genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.3e-094493253
            HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
     HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
            +  h  +Er+RR+++ + f++Lr+ lP       ++K   ++ +  Av++Ik+
  354244 44 KLLHRDIERQRRQEMATLFATLRTQLPLkY---IKGKRAVSDHVNGAVNFIKD 93
            6679************************77...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.18E-1139113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4774294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-744112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-74793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDPYQNLNPK GYQRQRPFSL SGEGGSSGGS GMPHETDDNK KKKKLLHRDI ERQRRQEMAT  60
LFATLRTQLP LKYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDDLSR ETGQRYKSNP  120
DSANSTGSDL GRSEPATVMV QPHVSGLEVV VSSKSSGPEA LPLSRVLETL QEKGLEVMSS  180
LTTRVNERLM HTIQVEVNSF GCIDLAWLQQ KLVEDLILST EY*
Cis-element ? help Back to Top
SourceLink
PlantRegMap354244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937000.0AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869672.11e-164transcription factor bHLH126
SwissprotQ9STJ61e-130BH126_ARATH; Transcription factor bHLH126
TrEMBLD7MG081e-163D7MG08_ARALL; Basix helix-loop-helix family protein
STRINGfgenesh1_pg.C_scaffold_70014171e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-132bHLH family protein