PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 353697 | ||||||||
Common Name | ARALYDRAFT_353697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 199aa MW: 22369.2 Da PI: 9.6998 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 53 | 9.6e-17 | 5 | 88 | 8 | 100 |
HHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 8 eiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 ++ + ++ lisw eng+sf+++d++ef +++Lp++ + s+f Fv+ L++YgF++v++++ e++++ F kgk +l +i+++ 353697 5 AVIVINLITALISWGENGKSFIIWDQQEFCRDLLPRVVRISSFPIFVKRLETYGFTEVESDH---------FEYANDDFVKGKPKLALEIHKR 88 5555566789**************************************************99.........67***********999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.0E-12 | 1 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-19 | 2 | 88 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.3E-16 | 2 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-15 | 12 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MKLHAVIVIN LITALISWGE NGKSFIIWDQ QEFCRDLLPR VVRISSFPIF VKRLETYGFT 60 EVESDHFEYA NDDFVKGKPK LALEIHKRFV QTLIRPNSVF KPLGIEPAAL KAMMKQYKEC 120 LPPGTFDFKP SLRDPDALRA HLMDAMKQGR AVPKDPLSLH EKELAATLMA DLKDVIKRRK 180 AFLMEALAAA GSSSGVTQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 353697 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL021633 | 5e-47 | AL021633.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16 (ESSA project). | |||
GenBank | AL161578 | 5e-47 | AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74. | |||
GenBank | CP002687 | 5e-47 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872461.1 | 1e-134 | heat stress transcription factor B-4b | ||||
TrEMBL | D7MB83 | 1e-144 | D7MB83_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_7000870 | 1e-145 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21002 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-20 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | 353697 |
Entrez Gene | 9303379 |