PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 353664
Common NameARALYDRAFT_353664
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 913aa    MW: 103421 Da    PI: 9.869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
353664genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.7e-151898893
            -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
      B3  8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
            s ++ +++l++p  f+++h ++k++ ++l+l++  s r+W+vkl  ++++    +++GW +F  a+ L++ D++vF++dg+++f+ +
  353664 18 SLAGHNSNLIIPDAFFTAHLKDKTGLTKLKLTSdASDRTWDVKL--NGRR----FAGGWDDFSAAHCLRDDDVLVFRHDGKMSFSKH 98
            55678889***********88889999****997899*******..8887....99**********************999988655 PP
2B340.74.1e-13911731498
             T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             g ++++k+f +++g+ k+    + l+++sg+sW + l+++++ g+ ++++ W++F++an++k g +  Fkl++ +++++++++++
  353664  91 GKMSFSKHFSRTNGLTKRW-CVIDLMNLSGESWALGLRHNNRTGQDYIRGHWRSFCRANEMKPGSSYRFKLVR-NGTRPLLRLCS 173
             579999*******999865.59*****************99999999************************98.77779999987 PP
3B378.19.7e-25208304199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             f++v+ ++++ +sg l+lp++fa+e+g+k++e  +++l d++g +W  ++   k++g+++++ GWk+F++an+L++gD++++++++ +++++++k+++k
  353664 208 FLTVTFKHYMIQSGHLRLPRSFARENGIKEAE--EIILVDKNGVKWPSYVASAKQRGEFYMAHGWKRFCEANKLNTGDTFTLEFVRGEDTTPMLKFCSK 304
             7889999********************99766..8***************999********************************99**********97 PP
4B341.52.5e-134495271196
             HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
              +++r ++p +f++++ + k++s++l+l++    r+Wevkl  ++++    +++GW++F   + L++ D+++F+ +g+++f  +v++
  353664 449 VQQSRQMIPAEFFSTYVEGKNQSTKLKLTSdALDRTWEVKL--NGRR----FARGWENFSTVHSLQDDDVLIFREIGDMTF--HVTA 527
             567889**********55567999***9996778*******..8887....99*********************8898888..6665 PP
5B369.54.4e-22581674499
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             + ++s++l+++rl+l k fa+++g+++++  ++ l++++g+sW+v l+y+   ++  +++GW++F+ angL++g f  Fkl++ ++++++++++++
  353664 581 AHVTSSNLSRDRLSLIKGFARSNGLNQRCC-EIDLMNQHGKSWTVGLRYSTANEQASISGGWRDFCLANGLEAGSFYRFKLVQ-NGARPLLRLCSE 674
             5689**********************8875.******************9999999*************************99.788899999986 PP
6B371.69.8e-23701798199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             f++ + ++++lksg+l ++++fa e+++k++e  ++tl d++g  W  ++   ++++g+y+l+kGW++F+ an+Lk+g+++++++++ +++++++k+++k
  353664 701 FLTMTFKPYMLKSGQLHISRPFAIENEIKEAE--DITLVDKNGGNWPSYVASgDGQGGKYYLAKGWRGFCAANRLKTGETFTLEFVRGESTTPMLKFCSK 798
             66777899******************999777..7***************767999999***************************99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-15694IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-14895IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.61711103IPR003340B3 DNA binding domain
CDDcd100172.67E-131394No hitNo description
SMARTSM010193.6E-151598IPR003340B3 DNA binding domain
CDDcd100171.34E-1379173No hitNo description
PfamPF023628.5E-1291174IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-1192173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-1195173IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-899175IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701112174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-21201304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-21205304IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-17208303No hitNo description
PROSITE profilePS5086315.524208304IPR003340B3 DNA binding domain
SMARTSM010196.3E-33208305IPR003340B3 DNA binding domain
PfamPF023622.2E-24208304IPR003340B3 DNA binding domain
CDDcd100171.40E-10439526No hitNo description
SMARTSM010192.8E-15439531IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589439531IPR003340B3 DNA binding domain
PfamPF023628.3E-8449525IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-14449531IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-13450533IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-21571673IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20574673IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-20578673No hitNo description
SMARTSM010192.0E-27578675IPR003340B3 DNA binding domain
PROSITE profilePS5086314.452578674IPR003340B3 DNA binding domain
PfamPF023621.2E-20581674IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-17695798IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-18700798IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.254701798IPR003340B3 DNA binding domain
CDDcd100172.32E-15701789No hitNo description
SMARTSM010191.2E-27701799IPR003340B3 DNA binding domain
PfamPF023623.2E-21701798IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MANPLSSSQS NRPFFVRSLA GHNSNLIIPD AFFTAHLKDK TGLTKLKLTS DASDRTWDVK  60
LNGRRFAGGW DDFSAAHCLR DDDVLVFRHD GKMSFSKHFS RTNGLTKRWC VIDLMNLSGE  120
SWALGLRHNN RTGQDYIRGH WRSFCRANEM KPGSSYRFKL VRNGTRPLLR LCSEVIPEGN  180
RSRANGKDNV SEKYSRAAGS ASTKQNKFLT VTFKHYMIQS GHLRLPRSFA RENGIKEAEE  240
IILVDKNGVK WPSYVASAKQ RGEFYMAHGW KRFCEANKLN TGDTFTLEFV RGEDTTPMLK  300
FCSKAKVKIE QEEAPEETET PFQKRARVSA EVGHSRRTQT PNKASHDPKI LQRKQPLQPC  360
SFSDQAKKVK QSIVNILTGI KRFRSELEIK EQSLEAALLE IDALVLNINR GESIGNQQNP  420
QVIIKSRSEV KIRKWNMNFC KPCLYLELVQ QSRQMIPAEF FSTYVEGKNQ STKLKLTSDA  480
LDRTWEVKLN GRRFARGWEN FSTVHSLQDD DVLIFREIGD MTFHVTASGR SFCKVQYISS  540
DEDGADEDDA WTEYSDSKNI ASKKKPRTEA KSSSKNSYLV AHVTSSNLSR DRLSLIKGFA  600
RSNGLNQRCC EIDLMNQHGK SWTVGLRYST ANEQASISGG WRDFCLANGL EAGSFYRFKL  660
VQNGARPLLR LCSETIPEED CYKGNRKEIF SESASMKQSK FLTMTFKPYM LKSGQLHISR  720
PFAIENEIKE AEDITLVDKN GGNWPSYVAS GDGQGGKYYL AKGWRGFCAA NRLKTGETFT  780
LEFVRGESTT PMLKFCSKTK IEQVPLDEER ETQEETETRV EKRARVSAGG GSSRRNQASN  840
KPNADPQNLK PRQPPCSISD RVQKVKQIIE DTLTGVKRIR SELEVKEQNL EASILEIDAL  900
GEKVLEINKI LK*
Cis-element ? help Back to Top
SourceLink
PlantRegMap353664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937130.0AB493713.1 Arabidopsis thaliana At4g31615 mRNA for hypothetical protein, partial cds, clone: RAAt4g31615.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872305.10.0B3 domain-containing protein REM2 isoform X2
SwissprotQ3E9T20.0REM2_ARATH; B3 domain-containing protein REM2
TrEMBLD7MB450.0D7MB45_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70008370.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]