PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

350644

Common Name

ARALYDRAFT_350644

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 329aa MW: 36363.5 Da PI: 4.6418

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
350644	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.7	5.2e-35	37	134	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk++rr+C++dC+++ +fp + ++f+nvh+ FG+++v++ l++l +eer dam+s++ye+++r + Pv G++gvil lq+q++ l+ael +++ 350644 37 PCVACKHQRRRCTPDCIFRLHFPVGRYQDFQNVHRQFGVRRVVENLENLAPEERGDAMKSIIYESNVRSQFPVDGCYGVILYLQNQIALLNAELLRTR 134 7*******************************************************************************************997766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.593	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-34	37	133	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MMMMRNRLVF FLILTSVIIL MTSQGSSGVN YGGNIEPCVA CKHQRRRCTP DCIFRLHFPV 60 GRYQDFQNVH RQFGVRRVVE NLENLAPEER GDAMKSIIYE SNVRSQFPVD GCYGVILYLQ 120 NQIALLNAEL LRTRSLLTAV VAASNPSSAF FNPTAANNFF HPSAAANFFY PAANNFFHPS 180 AAANFFYPAV SVESELINPS RNLNANNDDF TRVPANDGTI DFLGMGGYCG NFAYEECVTE 240 TTPLEGAPNN NAQQFLPNTN NLGSSPDNAN ANEALEQEQL GGAPRNNDIP RELSEFLTDE 300 ERSFSEAQDS GDKCASQSMT KKDDFPFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	33	130	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	33	130	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	350644

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL391146	1e-42	AL391146.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project).
GenBank	CP002688	1e-42	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873706.1	0.0	LOB domain-containing protein 6
TrEMBL	D7M6R0	0.0	D7M6R0_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_6001237	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15060.1	2e-33	LBD family protein

Link Out ? help Back to Top
Phytozome	350644
Entrez Gene	9309774