PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G15060.1

Common Name

ASL42, F2G14, LBD34

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 141aa MW: 15781.9 Da PI: 9.637

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G15060.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.8	2e-29	17	114	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaC+++rr+C++dC+++pyfpae++++f+n+h+l+++++++k lk+l ++ee+++amss++ye+++r + P +++ + + + +++++ l++ AT5G15060.1 17 QCAACRHQRRRCTPDCFFRPYFPAERHQEFQNFHRLHSNTRLQKKLKELglSPEEQREAMSSIIYESNIRSQFPGPSVAVTNTFSIFEPKSHSSPLNY 114 6*********************************************988999******************999998888888888877777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.02	16	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-25	17	90	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008150	Biological Process	biological_process
GO:0003674	Molecular Function	molecular_function

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MTLQGSSGVN NGGYVNQCAA CRHQRRRCTP DCFFRPYFPA ERHQEFQNFH RLHSNTRLQK 60 KLKELGLSPE EQREAMSSII YESNIRSQFP GPSVAVTNTF SIFEPKSHSS PLNYVAPVIK 120 SPPLSSIPPP PASLIPPLTT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-14	18	108	12	98	LOB family transfactor Ramosa2.1
5ly0_B	1e-14	18	108	12	98	LOB family transfactor Ramosa2.1
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Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	186522991	0.0
Genevisible	246543_at	1e-103
Expression Atlas	AT5G15060	-
AtGenExpress	AT5G15060	-
ATTED-II	AT5G15060	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G15060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G15060

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL391146	0.0	AL391146.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project).
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197010.2	1e-100	Lateral organ boundaries (LOB) domain family protein
Swissprot	P59469	1e-101	LBD34_ARATH; LOB domain-containing protein 34
STRING	AT5G15060.1	1e-99	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Link Out ? help Back to Top
Phytozome	AT5G15060.1
Entrez Gene	831358
iHOP	AT5G15060
wikigenes	AT5G15060

Publications ? help Back to Top
Shuai B,Reynaga-Peña CG,Springer PS The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol., 2002. 129(2): p. 747-61 [PMID:12068116] Libeau P, et al. Gene expression profiling of Arabidopsis meiocytes. Plant Biol (Stuttg), 2011. 13(5): p. 784-93 [PMID:21815983]