PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 343891
Common NameARALYDRAFT_343891, WRKY15
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 315aa    MW: 34011.3 Da    PI: 10.2224
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
343891genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31238295359
             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+a+d +++++tYeg+Hnh+
  343891 238 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSTMLIVTYEGDHNHS 295
             99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.3E-16187234IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.3E-33225295IPR003657WRKY domain
PROSITE profilePS5081130.607231297IPR003657WRKY domain
SuperFamilySSF1182901.29E-26234296IPR003657WRKY domain
SMARTSM007745.5E-37236296IPR003657WRKY domain
PfamPF031067.2E-27238294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAVELMTRNY ISGVGTDSFA VQEAAASGLK SIENFIGLMS RDSFNSDQPS SSSASAATTT  60
AEDLESARNT TADAAVSKFK RVISLLDRTR TGHARFRRAP VISPVINNQE EPKPTPFQSP  120
LPPPPPQMIR KGSFSSSMKT IDFSSLSSVT TESDHHKKIH RPSETAPFGS QTQSLSTTVS  180
SFSKSTKRKC NSENLLTGKC ASASSSGRCH CSKKRKIKQR RIIRVPAISA KMSDVPPDDY  240
SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERAADD STMLIVTYEG DHNHSLSAAD  300
LAGAAVADLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22224296273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap343891
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247040.0AF224704.1 Arabidopsis thaliana WRKY DNA-binding protein 15 (WRKY15) mRNA, complete cds.
GenBankAF3701940.0AF370194.1 Arabidopsis thaliana putative WRKY-type DNA-binding protein (At2g23320) mRNA, complete cds.
GenBankAY0629500.0AY062950.1 Arabidopsis thaliana putative WRKY-type DNA-binding protein (At2g23320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878677.10.0probable WRKY transcription factor 15
SwissprotO221760.0WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLD7LF990.0D7LF99_ARALL; WRKY DNA-binding protein 15
STRINGfgenesh1_pg.C_scaffold_40002330.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-158WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]