PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

342085

Common Name

ARALYDRAFT_342085

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 271aa MW: 29073.5 Da PI: 5.9624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
342085	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	7.1e-05	154	194	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq 342085 154 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 194 668889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	147	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-7	152	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.38E-4	152	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGDTAEDQND RAMMEAEGVT SFSELLMFSD GVLSSSSDHQ REGNVGDRGE DSLGFVFSGK 60 TGSRMLCFSG GYQNDDESLF LEPSVPSLGV SVLDPSCIKI DSKNSNDACT VDKSPKSSNK 120 KRTGTGNGQE PDQNRKPDKK CKRNQDKSSV GIAKVRKERL GERIAALQQL VSPYGKTDAA 180 SVLHEAMGYI KFLQDQIQVL CSPYLINHSL DGGVVTGDVM AAMKAKDLRS RGLCLVPVSS 240 TVHVENSNGA DFWSPVTMGH TTSQSLPHGF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	342085

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084520	0.0	AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885311.1	0.0	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	0.0	BH113_ARATH; Transcription factor bHLH113
TrEMBL	D7L9Z7	0.0	D7L9Z7_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_3001848	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	342085
Entrez Gene	9321377

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]