PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

339639

Common Name

ARALYDRAFT_339639

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 299aa MW: 33933.1 Da PI: 6.1967

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
339639	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.5	3.4e-25	133	182	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl 339639 133 TALSKETVSRYFYMPITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 182 57999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	117	202	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-21	135	182	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MADHKTKEEK PFSFLAHSPS FDHSSLSYPL FDWEEDLLAL QENSASQGFP LTTTSLSLPD 60 LEPLSEDVLN SYSSVSWNET EQNRGDGASS EKKMENGTVK ETTKKRKINE RHREHSVRII 120 SDITTYTTSS ASTALSKETV SRYFYMPITQ AAMELNVGLT LLKRRCRELG IRRWPHRKLM 180 SLNTLISNVK ELQKTEGEEN AEKLQEALEM LEKEKRTIEE LPDLEFKDKT KRLRQACFKA 240 NHKRKKKRSL KSDQFQVPSC SSSGSVPSDE SVDEAGMESD EEVKYLLCGF SSEFSSGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	339639

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056518	0.0	DQ056518.1 Arabidopsis thaliana RWP-RK domain-containing protein (At1g74480) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888979.1	0.0	protein RKD2
Swissprot	Q9CA66	0.0	RKD2_ARATH; Protein RKD2
TrEMBL	D7KS24	0.0	D7KS24_ARALL; RWP-RK domain-containing protein
STRING	fgenesh1_pg.C_scaffold_2001738	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-156	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	339639
Entrez Gene	9323608

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]