PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 339541
Common NameARALYDRAFT_339541
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 339aa    MW: 38427.8 Da    PI: 6.7754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
339541genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-1328921886
            --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
      B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
            +p ++ e h ++ + +kt +l+ + g+ W+v +  + k +++++++GW +Fv +n Lk+ +f+ F +dg
  339541 28 IPISYYE-H-LPRRLPKTAILMGTGGKIWKVAM--KSKHEKVYFERGWANFVADNALKDAEFLSFVFDG 92
            6777774.4.3456899****************..999999************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.09711104IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-1616103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1422101IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-523104IPR003340B3 DNA binding domain
PfamPF023628.2E-112792IPR003340B3 DNA binding domain
CDDcd100178.15E-1328101No hitNo description
Gene3DG3DSA:3.30.70.3303.3E-8184241IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549287.12E-11187243IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM001950.0077191329IPR020422Dual specificity protein phosphatase domain
PfamPF000762.8E-5195243IPR000504RNA recognition motif domain
SuperFamilySSF527999.66E-17247322IPR029021Protein-tyrosine phosphatase-like
Gene3DG3DSA:3.90.190.103.2E-21249320IPR029021Protein-tyrosine phosphatase-like
PROSITE profilePS5005415.413250320IPR020422Dual specificity protein phosphatase domain
PfamPF007822.3E-14251320IPR000340Dual specificity phosphatase, catalytic domain
PROSITE profilePS500569.562258310IPR000387Tyrosine specific protein phosphatases domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006470Biological Processprotein dephosphorylation
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0008138Molecular Functionprotein tyrosine/serine/threonine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGPRLQTESL VYVFAADQNS FVCVEQLIPI SYYEHLPRRL PKTAILMGTG GKIWKVAMKS  60
KHEKVYFERG WANFVADNAL KDAEFLSFVF DGYRRYAVSI YGYGEKEIND DETKSDTDYS  120
PDSLDTTTIL VESVQVFNKS ATSRKRANTI ENPEAYLDDP NSISFETALK DRPYELPQTQ  180
IVQEREEDGV VPKKLYVRGI PYQSTEDEIR SYFRSCGVIT KFDCKMRPED GAFSAFITFE  240
TLELVWCLCF SFIDQAIQSG GGVLVHCFMG MSRSLLILVS LGTVVRVVAY LMKKHGMGFS  300
KAVELIRSRR HQAYPNSGFI CSSNNLKNPS KTNLFQDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-152810326101At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap339541
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1967761e-57AF196776.1 Arabidopsis thaliana phragmoplastin-interacting protein PHIP1 (PHIP1) mRNA, complete cds.
GenBankAK1755491e-57AK175549.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-96-M12.
GenBankAL1329541e-57AL132954.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12.
GenBankCP0026861e-57CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7KRA10.0D7KRA1_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20016400.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.12e-52B3 family protein