PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 335492 | ||||||||
Common Name | ARALYDRAFT_335492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 35644.2 Da PI: 7.302 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.9 | 2.3e-15 | 113 | 164 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ 335492 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 164 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.07E-12 | 111 | 168 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-17 | 112 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-14 | 112 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.196 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-12 | 113 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-10 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MPLEAVVYPQ DPFGYLSNCK DFMFHDLCSQ EEVLAQDTKN NIDKLGQEQR FVEQGKEEDR 60 QWRNYNQYPL LIPSLEEELG LPAIDVDNHP PPQQRRKRRR TRNCKNKEEI ENQRMTHIAV 120 ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM GPKRTRTTST 180 THDPEGANTS TSSLVGPFSD FFSFPQYSTK SSSEVPESSS SPAEIEVTVA ESHANIKILV 240 KKKPRQLLKL IASLQSLRLT LLHLNVTTLH NSILYSISVK VEEGSQLNTV DDIATALNHT 300 IRRIQEESYF SK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 99 | QRRKRRR |
2 | 95 | 99 | RKRRR |
3 | 95 | 100 | RKRRRT |
4 | 113 | 124 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 335492 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088234 | 0.0 | AY088234.1 Arabidopsis thaliana clone 4596 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893233.1 | 0.0 | transcription factor bHLH94 | ||||
Swissprot | Q9SK91 | 0.0 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | D7KLS2 | 0.0 | D7KLS2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_1002057 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 1e-173 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 335492 |
Entrez Gene | 9329294 |
Publications ? help Back to Top | |||
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