PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 333453
Common NameARALYDRAFT_333453
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 265aa    MW: 29833.7 Da    PI: 6.5033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
333453genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008592114123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C+ C+k+F+++  L  H  +H
   333453  92 FQCKACKKVFTSHQALGGHRASH 114
              89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-791114No hitNo description
PfamPF139122.3E-991116IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.15992119IPR007087Zinc finger, C2H2
SMARTSM003550.07292114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576677.14E-7160187No hitNo description
PfamPF139129.6E-13164188IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307165187IPR007087Zinc finger, C2H2
SMARTSM003550.51165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MHGVMNSSCI DFVMFSRGQH DEDNMSRRPW KRERSMPTQH HHHLNLSPNE DEELANCLVL  60
LSNSGDAHGD HHKQHGHGKA KTVKKQKTAQ VFQCKACKKV FTSHQALGGH RASHKKVKGC  120
FASQDKEEEE EEEYKEDDDE DEDEDEEEEE DKSTAHIARK RSNAHECTIC HRVFSSGQAL  180
GGHKRCHWLT PSNYLRMTSL HDHHHSVGRP QPLDQPSLDL NLACQEYSVD PTAMSVGMIE  240
RDGGGNSHNA TSSSWLKLAS GDWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap333453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300400.0BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889340.20.0uncharacterized protein LOC9325404
TrEMBLD7KP490.0D7KP49_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10000180.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-23C2H2-like zinc finger protein