PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 332063
Common NameARALYDRAFT_332063
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 298aa    MW: 34292.5 Da    PI: 5.0528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
332063genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1813104199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             f+k++ + ++   +rlv+p+ + + + ++   ++t +l+ ++g  W+vk   + ++++ + +++GW++Fvk+ngL ++Df++F++dg ++f  +v+++r+
  332063  13 FLKIF-N-SHEHAQRLVIPRGYNKYYPNP--LPQTAVLKKPEGSFWNVKW--TISQEEtIRFQEGWEKFVKDNGLIDRDFLLFTYDGCRSF--WVRIHRN 104
             66666.4.4455567*******9666644..889****************..555555599***********************9885555..**99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-209104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1910103IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-1611103No hitNo description
PROSITE profilePS5086313.19711105IPR003340B3 DNA binding domain
PfamPF023622.0E-1613104IPR003340B3 DNA binding domain
SMARTSM010193.5E-1713105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-4201292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-6201283IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.28206296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELENGFPPY PDFLKIFNSH EHAQRLVIPR GYNKYYPNPL PQTAVLKKPE GSFWNVKWTI  60
SQEETIRFQE GWEKFVKDNG LIDRDFLLFT YDGCRSFWVR IHRNGLPLEP TAPIKIQEIS  120
DDEDDTIGHG DHHMEEGDSH ENMIVSLSLG SSDEADDDDD YDTTICEVNK ASESSKKGRL  180
ARKHRADSIA ASIDPETYLD DPKNPFFIST SSCSRRVLVI ARQVIKDYDL NFDGTIKLID  240
GFGELTRKVG KWKDRVVVYK WDEMFTRNKA NQGDAIICEV IREEDVVRSI KVHFVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-131310611103At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap332063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937970.0AB493797.1 Arabidopsis thaliana At5g57720 mRNA for hypothetical protein, partial cds, clone: RAAt5g57720.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866225.10.0B3 domain-containing protein At5g57720 isoform X2
SwissprotQ9FHH11e-175Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLD7MNV00.0D7MNV0_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80014060.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-175B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]