PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 330738
Common NameARALYDRAFT_330738
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 290aa    MW: 33382.2 Da    PI: 10.076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
330738genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.8e-1919111196
             EEEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvl.tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             ffkvl +  dv+++ +  lp +f++++  k+    ++++++++grsWev +  +k+++  y+ ++GW +Fv++n L  ++f++F+++g++ f+l+  +
  330738  19 FFKVLqSVVDVSSETLRALPHDFVRSFTDKE-LFGKMKIRTQWGRSWEVGI--SKNPRFyYMEKSGWDRFVRDNSLGNNEFITFTHKGNMHFTLN--I 111
             566662335777788889*********7665.5559***************..******566669***********************9999554..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1813115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-1815121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-1618113No hitNo description
SMARTSM010199.8E-1919115IPR003340B3 DNA binding domain
PfamPF023623.6E-1719111IPR003340B3 DNA binding domain
PROSITE profilePS5086313.15520115IPR003340B3 DNA binding domain
PROSITE profilePS508638.177198289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-12200286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-13200286IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-14201289IPR003340B3 DNA binding domain
CDDcd100172.29E-8208285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MATNPDFLRC KEERNNESFF KVLQSVVDVS SETLRALPHD FVRSFTDKEL FGKMKIRTQW  60
GRSWEVGISK NPRFYYMEKS GWDRFVRDNS LGNNEFITFT HKGNMHFTLN IFKLDGKEMM  120
QPPQSRALLA SSSRFKTEQG EDDKKEEVVS ELSDRGRTTA AESNGRKLNL RKKAAEESQE  180
SKRTEKLGAF SLVIFSTATE FTSLVKQGYL KFLRLRTSVA KDHMPDEKTM FKIHHPNGKK  240
CWDVVYLGRF GVFSGGWSRL VKEYPLVVGD TCKFTFIKPE ELLLVVSKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap330738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863383.10.0B3 domain-containing protein At2g16210
SwissprotQ5BPT71e-149Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7MQM80.0D7MQM8_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80000810.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-151B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]