PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 330465 | ||||||||
Common Name | ARALYDRAFT_330465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30157.2 Da PI: 7.5626 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.1e-12 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +WT+ Ed +l+++ ++ G W+tIa+++ gRt+kqc++rw+++ 330465 56 KVKWTESEDIKLKELMAL-GLQKWTTIAKKFE-GRTGKQCRERWHNH 100 579***********9875.5555*********.************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.9e-14 | 107 | 151 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W++eE+++l++ +k G+ W +Ia++++ gR+ +++k++w++ 330465 107 KTKWSEEEEQILIEEHKVVGTQ-WIKIAQKLP-GRSYNNVKNHWNST 151 579*****************99.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-6 | 49 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.885 | 51 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-10 | 55 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-10 | 58 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 58 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.3E-15 | 59 | 116 | No hit | No description |
SuperFamily | SSF46689 | 6.27E-26 | 81 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.842 | 102 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-12 | 106 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-17 | 110 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGEPQSFDVP VPKGIKNTTK EIMNQREDGK MKKTYQKKKK KAVSTSKYLK NSDIIKVKWT 60 ESEDIKLKEL MALGLQKWTT IAKKFEGRTG KQCRERWHNH AGPDIKKTKW SEEEEQILIE 120 EHKVVGTQWI KIAQKLPGRS YNNVKNHWNS TKRKVQNQSG GTVKPVGNNI LENYIRYVTI 180 NNDDFLKTAE SDGETTNSEN DDDSIDMLYG EMNLSLEATA ETTKPLTDAS TILPYIPMPE 240 ENSTVEVCKT MEDILELLSW WE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-36 | 53 | 155 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 330465 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF176004 | 0.0 | AF176004.1 Arabidopsis thaliana putative transcription factor (MYB100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874717.1 | 0.0 | transcription factor MYB115 isoform X2 | ||||
TrEMBL | D7MJ77 | 0.0 | D7MJ77_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7002692 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17910 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40430.1 | 1e-117 | myb domain protein 22 |
Link Out ? help Back to Top | |
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Phytozome | 330465 |
Entrez Gene | 9306776 |