PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 329503
Common NameARALYDRAFT_329503
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 192aa    MW: 21876 Da    PI: 8.1106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
329503genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-111664555
            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
             + +E++RR +++s ++eL +llP++   + + l+  + L +A +YIk+Lq
  329503 16 RKTIEKNRRMQMKSLYSELISLLPHQ--SSREPLTLPDELDEAANYIKKLQ 64
            5789*********************6..26777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.53E-51168No hitNo description
PROSITE profilePS5088810.9881163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.21E-91178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-81678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-61764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEPSHSNTGQ SRSVDRKTIE KNRRMQMKSL YSELISLLPH QSSREPLTLP DELDEAANYI  60
KKLQVNVEKK RERKRKLVAT TTFEKLNSVG SSSVSSSVDV SVPRRLPKIE IQETGSIFHI  120
FLVTSLEHKF MFCEIVRLLT EELGAEITHA GYSIVNDAVF HTLHCKVEEC DYGARSQIPE  180
RLEKFVNSVH Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16776EKKRERKRKL
26976KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap329503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936860.0AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869917.21e-139transcription factor bHLH162 isoform X2
SwissprotF4JIJ71e-118BH162_ARATH; Transcription factor bHLH162
TrEMBLD7MFG51e-138D7MFG5_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_70017301e-139(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-112bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]