PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 327750 | ||||||||
Common Name | ARALYDRAFT_327750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22870.7 Da PI: 5.2679 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.8 | 1.1e-35 | 11 | 106 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf +e+ +++f +vhk+FGasn +kll +p ++r da+ +l+yeA ar+rdPvyG+vg+i++lq+q e + ++++ 327750 11 PCGACKFLRRKCVAECVFAPYFDSEEgTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQAELAYVQTQ 106 7*********************998879*********************************************************99887665544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.412 | 10 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-35 | 11 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSGSTTGSGG PCGACKFLRR KCVAECVFAP YFDSEEGTSH FTAVHKVFGA SNASKLLMMI 60 PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQAEL AYVQTQLSTL QGLPPPNPQN 120 NSRTEAASSS NAPPISSVDN KSNVSSASLH IPCMSQQQEE QAKEAIEVST ESVDLSTLFG 180 LEDPVDEDGD LNALAREFLS KYLTGGKCRP SSPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 4 | 97 | 4 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 4 | 97 | 4 | 96 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 327750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473855 | 0.0 | AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879137.1 | 1e-155 | LOB domain-containing protein 31 | ||||
Swissprot | O81322 | 1e-131 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | D7M5R7 | 1e-157 | D7M5R7_ARALL; LOB domain protein 31 | ||||
STRING | fgenesh1_pm.C_scaffold_6002970 | 1e-158 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-106 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | 327750 |
Entrez Gene | 9311111 |