PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 327641
Common NameARALYDRAFT_327641
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 316aa    MW: 35146.7 Da    PI: 6.5215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
327641genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-15113164155
             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i+  A+++Ik+L+
  327641 113 QRMTHIAVERNRRQQMNEHLTSLRSLMPPS---YIQRGDQASIVGGAIDFIKELE 164
             79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-14111168No hitNo description
SuperFamilySSF474594.71E-17112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.126112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGGLMRFGEL GEQFGQISET TIEEKIPFLQ MLQCIEHPYT TTEPNQFLQS LLRIQTLESN  60
SCLTLETTIK RDPGQTDDPE KDPRTETGAA TVKEKRKRKR TRAPKNKDEV EKQRMTHIAV  120
ERNRRQQMNE HLTSLRSLMP PSYIQRGDQA SIVGGAIDFI KELEQLLQSL EAEKRNDGTN  180
ETPKTASCSS SSSRACTNSS VSSVSTTSED GFTARFGGGE TAEVEATVIQ NHVSLKVRCK  240
RGKGQILKAI VSIEELKLGI LHLTISSSFD FVIYSFNLKI EDGCKLGSAD EIATTVHQIF  300
EQINGEVMWS NLSRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap327641
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997800.0AY099780.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
GenBankAY1288810.0AY128881.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874978.10.0transcription factor bHLH57
SwissprotQ9M1280.0BH057_ARATH; Transcription factor bHLH57
TrEMBLD7M4V30.0D7M4V3_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_60028610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]