PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 323669
Common NameARALYDRAFT_323669
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 315aa    MW: 34727.7 Da    PI: 8.4843
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
323669genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.5e-18228262135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C +Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  323669 228 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 262
             9******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-1021314IPR016679Transcription factor, GATA, plant
SuperFamilySSF577166.18E-14220284No hitNo description
SMARTSM004019.7E-15222276IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.413222258IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14225260IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.32E-13227275No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16228262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESVELALKN SNRKDKSLTV TGGAQNGEDF SVDDLLDFSN EDDDDVFVED ETELKVQRKR  60
GVSDEITLHR TNDFSTADFP TSELAVPMDD LAELEWLSNF VEDSSFTPYL APTKKPVWLT  120
GNRRHPVPSV KEETCFKAPP PPVKTRPKRV RTGVTGWSHG SDSSSSSTTS SSSSSGPSSP  180
LWLAGAEFLD ESVAKTQKKK KKKKKVCKNA GQTQTQTQTQ TQTQGRRCGH CGVQKTPQWR  240
AGPLGAKTLC NACGVRYKSG RLLPEYRPAC SPTFSSELHS NHHRKVIEMR RKKEASDEAD  300
QTGLNQPVQV VPNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap323669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876069.10.0GATA transcription factor 6
RefseqXP_020882343.10.0GATA transcription factor 6
RefseqXP_020882344.10.0GATA transcription factor 6
SwissprotQ9SD381e-151GATA6_ARATH; GATA transcription factor 6
TrEMBLD7LTM80.0D7LTM8_ARALL; GATA transcription factor
STRINGfgenesh1_pm.C_scaffold_50012130.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-120GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]